program convert sequence information between different amino acid representations. This includes the 3-letter codon code (RNA and DNA), the one letter amino acid code and the 3-letter amino acid code ...
Recent research has shed light on the complexities of codon usage bias, revealing that synonymous mutations—mutations that do not change the amino acid sequence of a protein—can have ...
2022). We made crucial modifications to build the CodonBERT. As for architecutre, (1) the right-side network was rebuilt to match the encoder on the left-side; (2) codon tokens are now used as both ...